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sc-toolbox
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Contents:

  • Installation
  • Usage
    • sc_toolbox.tools.generate_expression_table
    • sc_toolbox.tools.relative_frequencies
    • sc_toolbox.tools.relative_frequency_per_cluster
    • sc_toolbox.tools.correlate_to_signature
    • sc_toolbox.tools.remove_outliers
    • sc_toolbox.tools.add_percentages
    • sc_toolbox.tools.ranksums_between_groups
    • sc_toolbox.tools.generate_count_object
    • sc_toolbox.tools.tidy_de_table
    • sc_toolbox.tools.correlate_means_to_gene
    • sc_toolbox.tools.extended_marker_table
    • sc_toolbox.tools.generate_pseudobulk
    • sc_toolbox.tools.automated_marker_annotation
    • sc_toolbox.tools.de_res_to_anndata
    • sc_toolbox.plot.Colormaps
    • sc_toolbox.plot.custom_plot_size
    • sc_toolbox.plot.standard_lineplot
    • sc_toolbox.plot.average_expression
    • sc_toolbox.plot.average_expression_per_cluster
    • sc_toolbox.plot.average_expression_split_cluster
    • sc_toolbox.plot.average_expression_per_cell
    • sc_toolbox.plot.gene_expression_dpt_ordered
    • sc_toolbox.plot.relative_frequencies_boxplots
    • sc_toolbox.plot.split_boxplot
    • sc_toolbox.plot.marker_dendrogram
    • sc_toolbox.plot.volcano_plot
    • sc_toolbox.plot.cluster_composition_stacked_barplot
    • sc_toolbox.plot.gene_boxplot
    • sc_toolbox.plot.colors_overview
    • sc_toolbox.plot.relative_frequencies_lineplot
    • sc_toolbox.plot.annotated_cell_type_umap
    • sc_toolbox.plot.genotype_vs_genotype_umaps
  • Contributor Guide
  • Contributor Covenant Code of Conduct
  • Discussions
  • Credits
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