sc_toolbox.plot.genotype_vs_genotype_umaps

sc_toolbox.plot.genotype_vs_genotype_umaps(adata, genotype_key, genotype_label_1, genotype_label_2, color, hide_one_legend=True, figsize=(12, 6))

Plots a two UMAPs of genotypes next to each other displaying only the colors of the second UMAP.

Parameters:

• adata – AnnData object

• genotype_key (str) – Key of the genotypes

• genotype_label_1 (str) – Name of the first genotype; Must be contained in the genotypes

• genotype_label_2 (str) – Name of the second genotype; Must be contained in the genotypes

• color (str) – Key to color by

• hide_one_legend (bool) – Whether to hide the legend of the genotype_label_1

• figsize (Tuple[int, int]) – Size of the figure

Example