sc_toolbox.tools.relative_frequency_per_cluster#

sc_toolbox.tools.relative_frequency_per_cluster(adata, group_by='cell_type', xlabel='days', condition=None)[source]#

Calculates relative frequencies per cluster

Parameters:

  • adata – AnnData object containing the data

  • group_by (str) – The label to group by for the clusters

  • xlabel (str) – x-axis label

  • condition – condition to combine by

Returns:

Pandas DataFrame of relative frequencies