sc_toolbox.tools.tidy_de_table

sc_toolbox.tools.tidy_de_table(de_test, adata, cells, ids=None, qval_thresh=0.9, group_by='treatment', cols=None)

Sorts diffxpy de table and adds percentages of expression per group

Parameters:

• de_test – diffxpy de test

• adata – AnnData object

• cells –

• ids –

• qval_thresh (float) –

• group_by (str) –

• cols –

Returns:

Pandas Dataframe of diffxpy table with percentages