sc_toolbox.tools.relative_frequencies#

sc_toolbox.tools.relative_frequencies(adata, group_by='cell_type', xlabel='days', condition='batch')[source]#

Calculates the relative frequencies of conditions grouped by an observation.

Parameters:

  • adata – AnnData Objet containing the data

  • group_by (str) – Column name to group by

  • xlabel (str) – x-axis label

  • condition (str) –

Returns:

Relative frequencies in a Pandas DataFrame