sc_toolbox.tools.add_percentages#

sc_toolbox.tools.add_percentages(adata, table, ids, group_by, threshold=0, gene_label='gene')[source]#

Add columns to existing diffxpy table specifying percentage of expressing cells.

Parameters:

  • adata – AnnData object containing the data

  • table – Table as generated by diffxpy

  • ids – Identifiers to add percentages for.

  • group_by (str) – Label to group by

  • threshold (int) – Cell count threshold.

  • gene_label (str) – Label of the genes

Returns:

Table containing percentage of expressing cells