Index A | C | D | E | G | M | R | S | T | V A add_percentages() (in module sc_toolbox.tools) annotated_cell_type_umap() (in module sc_toolbox.plot) automated_marker_annotation() (in module sc_toolbox.tools) average_expression() (in module sc_toolbox.plot) average_expression_per_cell() (in module sc_toolbox.plot) average_expression_per_cluster() (in module sc_toolbox.plot) average_expression_split_cluster() (in module sc_toolbox.plot) C cluster_composition_stacked_barplot() (in module sc_toolbox.plot) Colormaps (class in sc_toolbox.plot) colors_overview() (in module sc_toolbox.plot) correlate_means_to_gene() (in module sc_toolbox.tools) correlate_to_signature() (in module sc_toolbox.tools) custom_plot_size() (in module sc_toolbox.plot) D de_res_to_anndata() (in module sc_toolbox.tools) E extended_marker_table() (in module sc_toolbox.tools) G gene_boxplot() (in module sc_toolbox.plot) gene_expression_dpt_ordered() (in module sc_toolbox.plot) generate_count_object() (in module sc_toolbox.tools) generate_expression_table() (in module sc_toolbox.tools) generate_pseudobulk() (in module sc_toolbox.tools) genotype_vs_genotype_umaps() (in module sc_toolbox.plot) grey_blue (sc_toolbox.plot.Colormaps attribute) grey_green (sc_toolbox.plot.Colormaps attribute) grey_red (sc_toolbox.plot.Colormaps attribute) grey_violet (sc_toolbox.plot.Colormaps attribute) grey_yellow (sc_toolbox.plot.Colormaps attribute) M marker_dendrogram() (in module sc_toolbox.plot) R ranksums_between_groups() (in module sc_toolbox.tools) relative_frequencies() (in module sc_toolbox.tools) relative_frequencies_boxplots() (in module sc_toolbox.plot) relative_frequencies_lineplot() (in module sc_toolbox.plot) relative_frequency_per_cluster() (in module sc_toolbox.tools) remove_outliers() (in module sc_toolbox.tools) S split_boxplot() (in module sc_toolbox.plot) standard_lineplot() (in module sc_toolbox.plot) T tidy_de_table() (in module sc_toolbox.tools) V volcano_plot() (in module sc_toolbox.plot)